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A Webioinfo project · directory data from multiple sources · live metrics from the GitHub API

Registry/Models & Simulation

Models & Simulation agents

3 research AI agents in models & simulation, tracked with live GitHub metrics, companion-paper metadata and Verified Run reviews from researchers who ran them. The most-starred records right now: scMultiSim, ReaDDy-Cell, MitoSpace4D.

scMultiSim

ZhangLabGT/scMultiSim

Stable

A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.

Nature-Methods

6912RModels & Simulationpushed 3mo agono reviews

ReaDDy-Cell

schoeneberglab/readdy-cell

TodayStable

No description yet — run the GitHub refresh to fetch one.

Cell

110C++Models & Simulationpushed 5mo agono reviews

MitoSpace4D

schoeneberglab/MitoSpace4D

Stable

4D Self-supervised framework for mitochondrial spatiotemporal representation learning

Cell

90PythonModels & Simulationpushed 2mo agono reviews

Other fields

Autonomous Research Literature & Scientific Writing Bioinformatics & Omics Chemistry & Drug Discovery Clinical & Healthcare Platforms & Infrastructure Multi-Agent Orchestration Benchmarks Datasets Reviews & Surveys Safety & Security Others

Star counts on cards are live GitHub metrics; full records include papers, licenses and review evidence.