Bioinformatics & Omics agents

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

Open-source AI research assistant for biomedicine — chat to run RNA-seq, drug discovery, clinical analysis, and more. Built on Claude Code with 140 K-Dense scientific skills, real-time dashboard, and RStudio/JupyterLab integration. | 开源生物医学 AI 研究助手，对话即可驱动转录组、药物发现、临床分析等工作流，集成 140 个科学技能与实时研究看板。

A general, evolvable, and distributed agent framework & harness for data science.

AI-Powered Bioinformatics Research Assistant. Built on OpenClaw.

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An AI Agent for Fully Automated Multi-omic Analyses

CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets

A harness for spatial biology

LLM agents for working with the SRA and associated bioinformatics databases.

CRISPSR-GPT LLM Agent Public Welcome Page

Conversational & memory-enabled AI research partner for multi-omics analysis. CLI + Desktop App (installers in Releases). From biological idea to full research paper.

STELLA: Self-Evolving LLM Agent for Biomedical Research

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BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments

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CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

BioDSA: Framework for Vibe Prototyping of AI Agents for Biomedicine

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The screader is a soure code reading tool based the libclang. It is implemented by the C.

Your 24/7 bioinformatics copilot who make your analysis easy

Bioinformatics Retrieval Augmented Digital (BRAD) Assistant - A LLM powered agent for bioinformatics 🤖

Automatic annotation of single-cell RNA-seq data from the literature

The self-evolving agentic framework for bioinformatics

SCassist : An AI Based Workflow Assistant for Single-Cell Analysis

A Multi-Modal AI Copilot for Single-Cell Analysis with Instruction Following

omicverse agent skill

Light, Practical, memory-enabled AI orchestrator for science. Built on NanoClaw.

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IAN: An Intelligent System for Omics Data Analysis and Discovery

Gain biological insights using LLM.

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Data analysis for the scBaseCount manuscript

4D Self-supervised framework for mitochondrial spatiotemporal representation learning

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